the actual plotting function for rlePlot — rlePlot_helper • brentlabRnaSeqTools

the actual plotting function for rlePlot

Usage

rlePlot_helper(
  count_df,
  log2_transformed_flag,
  title,
  gene_id_path = Sys.getenv("GENE_ID_PATH")
)

Arguments

count_df: counts in gene x sample
log2_transformed_flag: boolean where TRUE indicates the counts are in log2 space
title: title of the output plot
gene_id_path: path to gene_ids. Default set to read from Sys.getenv("GENE_ID_PATH")

Value

a ggplot