plot RLE for a given column filter
Usage
rlePlot(deseq_object, model_matrix, column_filter, title)
Arguments
- deseq_object
a deseq object with results from the DESeq() call
- model_matrix
the deseq_object model matrix
- column_filter
a vector of fastqFileNames (or whatever the columns -- samples -- are called)
- title
of the plots
Value
list with slots norm_count_rle and effect_removed_rle