Remove the libraryDate effects from KN99 dds objs

Remove the libraryDate effects from KN99 dds objs

Usage

removeLibdateByReplicate(dds, replicate_colname)

Arguments

dds

a deseq data object with either a formula or matrix in the design note that if libraryDate is not included in the design, then this function doesn't remove anything

replicate_colname

which column to use as the replicate grouping. If your replicates are described by more than 1 column, for this purpose, group them to create 1 column. does not need to be the same as what is in the design slot of the dds

Value

a list with both the unremoved and removed effect rle and summary