post counts to database — postCounts • brentlabRnaSeqTools

using the package httr, post the raw count .csv, which is the compiled counts for a given run, to the database

Usage

postCounts(
  database_counts_url,
  run_number,
  auth_token,
  count_df,
  fastq_table,
  count_file_suffix = "_read_count.tsv"
)

database_counts_url: eg database_info$kn99_urls$Counts. See database_info
run_number: the run number of this counts sheet -- this is important b/c fastqFileNames aren't necessarily unique outside of their runs
auth_token: see getUserAuthToken
count_df: the counts read in as a dataframe. Make sure there is no 'feature' or 'gene_id' column. Colnames need to be the sample identifier
fastq_table: a recent pull of the database fastq table
count_file_suffix: the suffix appended to the fastqFileName in the count file column headings. default is "_read_count.tsv"

a list of httr::response() objects