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Get the log2cpm of a given locus in the htseq output

htseq_locusLog2cpm.Rd

Get the log2cpm of a given locus in the htseq output

Usage

htseq_locusLog2cpm(
  htseq_filename,
  gene_id,
  markers = c("CNAG_NAT", "CNAG_G418")
)

Arguments

htseq_filename

filepath to htseq output

gene_id

gene id for which to return the log2cpm

markers

markers in library. Default CNAG_NAT, CNAG_G418

Value

log2cpm of a given gene