create a sample sheet for the novoalign pipeline

create a sample sheet for the novoalign pipeline

Usage

createNovoalignPipelineSamplesheet(meta_df, sequence_dir_prefix)

Arguments

meta_df

metadata for the samples you'd like to QC. note that these must be included in the pipeline_output_dirpath

sequence_dir_prefix

filepath to append to the run_1234_samples/fastq.fq.gz eg "/scratch/mblab/chasem/rnaseq_pipeline/scratch_sequence"

Value

a dataframe in correct format for novo+hsteq pipeline