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ExpressionAPI

Bases: AbstractRecordsAndFilesAPI

Class to interact with the ExpressionAPI endpoint.

Source code in yeastdnnexplorer/interface/ExpressionAPI.py 
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class ExpressionAPI(AbstractRecordsAndFilesAPI):
    """Class to interact with the ExpressionAPI endpoint."""

    def __init__(self, **kwargs) -> None:
        """
        Initialize the ExpressionAPI object.

        :param kwargs: parameters to pass through AbstractRecordsAndFilesAPI to
            AbstractAPI.

        """
        valid_param_keys = kwargs.pop(
            "valid_param_keys",
            [
                "id",
                "regulator",
                "regulator_locus_tag",
                "regulator_symbol",
                "batch",
                "control",
                "mechanism",
                "restriction",
                "time",
                "source",
                "source_name",
                "source_time",
                "lab",
                "assay",
                "workflow",
                "effect_colname",
                "pvalue_colname",
            ],
        )

        url = kwargs.pop("url", os.getenv("EXPRESSION_URL", None))

        super().__init__(url=url, valid_keys=valid_param_keys, **kwargs)

    def create(self, data: dict[str, Any], **kwargs) -> Any:
        raise NotImplementedError("The ExpressionAPI does not support create.")

    def update(self, df: pd.DataFrame, **kwargs) -> Any:
        raise NotImplementedError("The ExpressionAPI does not support update.")

    def delete(self, id: str, **kwargs) -> Any:
        raise NotImplementedError("The ExpressionAPI does not support delete.")

    def submit(self, post_dict: dict[str, Any], **kwargs) -> Any:
        raise NotImplementedError("The ExpressionAPI does not support submit.")

    def retrieve(
        self, group_task_id: str, timeout: int, polling_interval: int, **kwargs
    ) -> Any:
        raise NotImplementedError("The ExpressionAPI does not support retrieve.")

__init__(**kwargs)

Initialize the ExpressionAPI object.

Parameters:

Name Type Description Default
kwargs

parameters to pass through AbstractRecordsAndFilesAPI to AbstractAPI.

 {}
Source code in yeastdnnexplorer/interface/ExpressionAPI.py 
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def __init__(self, **kwargs) -> None:
    """
    Initialize the ExpressionAPI object.

    :param kwargs: parameters to pass through AbstractRecordsAndFilesAPI to
        AbstractAPI.

    """
    valid_param_keys = kwargs.pop(
        "valid_param_keys",
        [
            "id",
            "regulator",
            "regulator_locus_tag",
            "regulator_symbol",
            "batch",
            "control",
            "mechanism",
            "restriction",
            "time",
            "source",
            "source_name",
            "source_time",
            "lab",
            "assay",
            "workflow",
            "effect_colname",
            "pvalue_colname",
        ],
    )

    url = kwargs.pop("url", os.getenv("EXPRESSION_URL", None))

    super().__init__(url=url, valid_keys=valid_param_keys, **kwargs)